For a while, I was just reusing the used paper bags from Trader Joe's to carry my boots and waders. My current $2 nylon duffel bag from the Assistance League store is a serious upgrade.
Don't get me wrong. I LOVE technical gear, and I've parted with plenty of $$$ for Patagonia, TNF, Gregory, Marmot, Columbia, Mountain Hardware, Oakley, Burton, DaKine, etc.
I just don't think a bag to carry waders and boots requires cutting edge design, high tech materials, artisan craftsmanship (more likely communist sweatshop), and a price tag that rivals most of my Lamson-Waterworks US-made reels. Anyone who wants to stow their gear in Fishpond, Filson, or Orvis, more power to you. Nothing wrong with splurging for luxury if you want it. When it comes down to it, all my recreational activities are really just luxuries.
If I want to put everything in one place, plastic storage bins are great as Curtis mentioned. That's my typical method for hauling car camping gear. But, the large plastic bins are not an option when traveling with multiple friends in smaller vehicles.
For airline travel, I buy decent quality rolling luggage at the discount stores... Ross, Marshalls, or TJ Maxx.